Uighur Muslim Genetic Testing Lauren Rose Wilkes

What is happening?

The Chinese government has started collecting the genetic information of Uighur Muslims, an ethnic minority group in Western China. This is happening while the Chinese government is currently detaining as many as 1 million people in internment camps. Although they claim they have not been hurting them, there is much speculation as to what the Chinese government is doing in these camps(5). They claim they are using the camps to re-educate the Muslims and assimilate them into Han Chinese culture, very similar to the Native American internment camps that the United States and Canada used to have. To collect the Uighur DNA, the Chinese government will make the population come in for mandatory health checks, where they will then draw their blood and use that to collect and store their genetic information without their consent. In many cases, they were strongly coerced into giving up their genetic information(3).

What technology is being used?

The DNA being collected is primarily used to distinguish between ethnic groups. Uighur DNA is compared to samples from other ethnicities. The DNA is genetically compared using microarray-based autosomal DNA testing(3). Paternal ancestry is tracked by looking at the y chromosome while maternal DNA is tracked by looking at mitochondrial DNA. The genomes collected are then parsed up into pieces or separate SNPs or haplotypes. They then compare the haplotypes in the sample to haplotypes from a database, which allows them to see in which ethnicities these haplotypes are most common and match the DNA sample to the ethnicity it most likely came from based on its genetic information(2).

Where are they getting this technology?

China got their technology from the United States company Thermo-Fisher. Thermo-Fisher sells lab equipment, DNA testing kits, and DNA mapping machines to help scientists determine a person’s ethnicity and identify diseases they are susceptible to. China accounted for 10% of Thermo-Fisher’s revenue. In addition, genetic information to use to compare to Uighur DNA was provided by Yale geneticist Kenneth Kidd(3).

What are the uses of this technology?

This genetic technology has been widely used not only by China. In the United States, it can be used to track down criminals. If a family member gives their genetic information to databases like 23 and me, the US government can then use that family member’s data to trace criminals and solve crimes that were unsolvable before(5). Many people are glad that this technology exists to catch criminals, but issues like those in China raise issues on the ethical issues that might arise if this technology is used for the wrong reasons(3).

Why are they collecting this data?

In patents filed in 2017, the Chinese stated that they are collecting this data to help them determine the geographical origin of criminals by collecting DNA samples from the crime scene. They also cite this as a way to stop terrorism(3). The government has had a long history of treating Uighurs as a threat. Many Chinese citizens believe that they are terrorists, and they have been accused of many violent acts of terrorism throughout this decade. They put them in internment camps to try to ensure that they remain loyal to the Chinese government(3). The Chinese say they are collecting this DNA database to track any Uighur Muslims that try to leave the detainment camps.

What issues does this raise in general?

Many scientists are worried about the fact that the Chinese government entered the Uighurs genetic information into a global database when they are not sure that their data collection was consensual. This violates many privacy concerns, both in the scientific community and abroad(1). It is also a big issue that the Chinese government could be using this technology to keep an entire population trapped with no way to escape.

Parallels in United States?

What happens if the United States citizens DNA ever got into the hands of the wrong people. Even though now, the government has special privacy protections, if that ever changed, the DNA on file is permanent and can easily be abused. In addition, many companies that collect DNA, like 23 and me, do not reveal who they give the DNA to, so users are at risk. They also do not compensate those who give their DNA for adding their DNA to global databases. Especially with online data theft, this is especially a concern. There are some benefits, such as catching criminals or individual benefits such as determining what diseases people may be at risk for, so they can take preventative measures. However, even in the United States, there are discussions about the possible risks(1).

What issues does this raise for the United States?

Dr. Cavlan stated, “Honestly, there’s been a kind of naïveté on the part of American scientists presuming that other people will follow the same rules and standards wherever they come from,”. This is very accurate. Even though Americans or other western countries create new technology and develop rules to regulate its use, often times this technology can get into the hands of countries who do not have the same standards, and it can be used to fuel genocide or other human rights violations(5). This is important as developed countries begin to create more high-tech genetic tests that can be used in other ways to violate human rights. The United States and other developed nations should ensure that they are protecting these tests or at least ensure that people worldwide are not being oppressed using this technology.

Should people be held accountable?

Thermo Fisher says they were unaware of what China was using the technology for, and they have also agreed to stop selling their technology to Xinjian province, where the DNA collection is happening. In addition, Kidd says he thought the Chinese were following the worldwide norm of requiring consent to collect DNA(3). However, they still contributed to human rights violations with no repercussions. There should be a significant discussion as to whether or not they should be held responsible for the repercussions of their contributions.

Why is this important?

As these technologies develop, it is important to consider their ramifications and effects. Even if the United States or other western countries have some form of regulation, often other countries do not. The Uighur Muslims are just one example of the potential for genetic testing to be used to oppress different groups. It is important to consider how we as citizens can work ourselves and also hold our governments accountable for ensuring that these technologies do not violate any human rights. This is important both for the sake of helping others but also for protecting ourselves in the future.

 Works Cited:

  1. AncestryDNA® – Frequently Asked Questions (United States). (n.d.). Retrieved November 14, 2019, from https://www.ancestry.com/dna/en/legal/us/faq#about-3.
  2. Curtis, R. (2015, May 5). AncestryDNA | Breaking Down the Science Behind Ethnicity Results | Ancestry. Retrieved December 1, 2019, from https://www.youtube.com/watch?v=o0mVUu2kRcs.
  3. Haas, B. (2017, December 13). Chinese authorities collecting DNA from all residents of Xinjiang. Retrieved November 14, 2019, from https://www.theguardian.com/world/2017/dec/13/chinese-authorities-collecting-dna-residents-xinjiang.
  4. Raven, K. (2018, November 18). Is an At-Home DNA Test an Ideal Gift, Really? Retrieved November 14, 2019, from https://www.yalemedicine.org/stories/at-home-genetic-test-kit-holiday-gift/.
  5. Wee, S.-lee. (2019, February 21). China Uses DNA to Track Its People, With the Help of American Expertise. Retrieved November 14, 2019, from https://www.nytimes.com/2019/02/21/business/china-xinjiang-uighur-dna-thermo-fisher.html.

Melanoma

By: Zach O’Connor

What is melanoma?

Malignant melanoma is the most serious type of skin cancer, and it is characterized by the uncontrollable growth of melanocytes (skin cells that produce melanin). In the United States, melanoma affects 30 out of 100,000 men and 18 out of 100,000 women (“Melanoma”, 2018).

This photo indicates the progression of melanoma.
Source:https://www.alamy.com/stock-image-schematic-illustration-of-the-process-and-development-of-melanoma-167890640.html

The graphic above illustrates the progression of melanoma. The disease gets more serious as it spreads deeper into the skin.  The survival rate of melanoma at the first stage is at 98.5%, and it drops down to 22.5% at the final stage (“Melanoma Survival Rates”, n.d).

Melanoma is a condition where a single gene doesn’t dictate the disease. However, there are many genes that are linked to the disease. Two of the main genes are CDKN2A and BAP1. A mutation of the CDKN2A is linked to greater risk of developing melanoma. (Hayward, 2003). The specific mutation of CDKN2A disrupts the proteins that function as tumor suppressants. The mutation of this gene also leads to developing melanoma at a younger age and greater risks of other cancers. With the CDKN2A mutation, you are around 28% more likely to develop melanoma (“CDKN2A”, n.d.). Another gene linked to melanoma is BAP1. A dominant inherited allele on the rs387906848 SNP causes BAP1 tumor predisposition syndrome (“rs387906848”, n.d.). This condition increases the risk of cancerous and noncancerous tumors from 14% to 29%. The BAP1 mutation also has an incidence of malignancy of around 70% (Carbone et al., 2013).

Why Get Tested?

While genetic tests won’t say you’re set to develop melanoma, it will make you aware of certain risks associated with the disease. Because there are so many genes associated with melanoma, a single gene DNA sequence, whole genome sequence, or a SNP Chip test are recommended. Since the genes linked to melanoma are known, a test would analyze the presence or mutation associated with each gene. Companies such as AmbryGenetics, Invitae, and GeneDx offer genetic tests that will analyze genes associated with melanoma. These tests will indicate if you are more at risk to develop melanoma. When looking at tests, it is best to use one that is able to scan for multiple genes. The whole genome test, while expensive, will show your exact genetic markup. The SNP Chip test is a cheaper alternative that looks at the specific melanoma related genes. Ultimately when deciding on a test, it depends how much you want to know and how much you are willing to spend.

Think Before you Spit

One of the main reasons to not take a test is that it won’t clearly tell you if you will develop melanoma. Around 90% of people who develop melanoma do not have a genetic mutation that accounts for it (“Should I Get”, n.d.). Environmental factors such as UV radiation are the main cause of melanoma. The test results may be confusing for some consumers, and it may cause them to make irrational decisions. Therefore, because of the limited predictive value of the tests, genetic tests for melanoma are not worth the time and money.

PAn early genetic diagnosis could allow a psychiatric disorders prevention The study gives hope to identify eventual gene modifications
Source: http://bioethicsobservatory.org/2017/09/regulation-genetic-testing-united-states/4865

Ethical Considerations

There are some concerns with privacy associated with genetic testing. Some patients are concerned that genetic test results may result in discrimination by insurance providers. However there are laws such as the Genetic Information Nondiscrimination Act that helps protect patients. There are other ethical concerns associated with genetic testing. For instance, there can be liability issues associated with genetic test results. An example of this is a patient’s decision to conceive children or to terminate pregnancies based on test results (Dickens, Pei, & Taylor, 1996). Genetic tests effectively dictate the decisions people make, and some people may not fully understand the results of the test. Test results can cause stress, and they can drastically change lifestyles. There is also concern about employer discrimination associated with genetic test results.

Asking the Right Questions Before Getting the Test

For melanoma, genetic tests aren’t the sole decider of the disease. The genetic test results will show different genes that put you at risk to develop it. For example, if someone tests positive for the BASP1 tumor predisposition syndrome, it is likely that one of their parents had the condition. This is because the syndrome is autosomal dominant.  If someone tests positive for genes associated with melanoma, they should be aware of the risks. The first thing to realize is that you aren’t guaranteed to get it. If you are careful about sun exposure and annual skin screening, you can easily prevent the disease. If they test negative, they should not think that they won’t get the disease and ignore safe lifestyle. People should follow the same advice if they test negative for the melanoma associated genes. Patients should disclose their results with doctors. If they are at risk for developing melanoma, they should make dermatologists aware so that the patient can take preventative measures.


The best way to prevent melanoma is to cover up, use sunscreen, and stay in shade as much as possible. Source: https://www.everydayhealth.com/melanoma/preventing-melanoma-reducing-sun-exposure-damage-key/

References

Carbone, M., Yang, H., Pass, H. I., Krausz, T., Testa, J. R., & Gaudino, G. (2013). BAP1 and cancer. Nature reviews. Cancer, 13(3), 153–159. doi:10.1038/nrc3459  

CDKN2A. (n.d.). Retrieved from https://www.snpedia.com/index.php/CDKN2A.

Dickens, B. M., Pei, N., & Taylor, K. M. (1996). Legal and ethical issues in genetic testing and counseling for susceptibility to breast, ovarian and colon cancer. CMAJ: Canadian Medical Association journal = journal de l’Association medicale canadienne, 154(6), 813–818. Retrieved from https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1487772/

Hayward, N. Genetics of melanoma predisposition. Oncogene 22, 3053–3062 (2003) https://www.nature.com/articles/1206445#citeas

Melanoma – Genetics Home Reference – NIH. (2018, August). Retrieved from https://ghr.nlm.nih.gov/condition/melanoma#statistics

Melanoma Survival Rates. (n.d.). Retrieved from https://www.curemelanoma.org/about-melanoma/melanoma-staging/melanoma-survival-rates/

rs387906848. (n.d.). Retrieved from https://www.snpedia.com/index.php/Rs387906848

Should I Get Genetic Testing For Melanoma? (n.d.). Retrieved from https://www.aad.org/diseases/skin-cancer/melanoma-genetic-testing.

Is Genetic Testing the Best Choice for Alzheimer’s?

Nate Ware

Image result for Alzheimer's

The thought of losing memory of your friends and family is an extremely scary thought. Alzheimer’s is a neurodegenerative condition that affects cognitive function and memory. If any one of you, like me, has gone through the progression of this disease with a family member you know the sadness associated with looking your loved one in the face and them not remembering who you are. The pain this disease causes to loved ones is immense. If you have seen this disease in your family you may be wondering what your chances of developing the condition are. Lucky for you there are genetic tests that you could take to see if you are at an increased risk for the disease.

What are my chances?

According to 23 and Me, Alzheimer’s is 60-80% caused by genetics. This means that the majority of your risk comes from genetic factors. But it also shows that environmental factors can play a fairly large role in your risk as well. Regardless, if there is family history it is good to be aware of your risk. Genetic testing for Alzheimer’s is relatively new in terms of genetic tests for disease because according to alzheimers.org.uk, ” At present, the relationship between genetics and dementia is not fully understood.” However, it has been found that there is a connection between the APOE gene and Alzheimer’s risk. The -e4 variant of this gene is known to cause increase risk of Alzheimer’s to people with this mutation. It is not a defining factor though, according to Mayo Clinic, ” not everyone who has one or even two APOE e4 genes develops Alzheimer’s disease. And the disease occurs in many people who don’t even have an APOE e4 gene, suggesting that the APOE e4 gene affects risk but is not a cause”.

Image result for alzheimer's genetic testing

So What Is The Test?

An individual that is interested in genetic testing for Alzheimer’s would receive a single gene sequencing of the APOE gene looking for SNPs at rs7412 and rs429358. If both come back with the C allele, then the individual has the -e4 variant indicating increased risk for Alzheimer’s. So far we can not give a definite number as to how much this result increases your risk by. Also this gene is not the sole genetic indicator of Alzheimer’s so a negative result does not mean you are still not at risk especially if you have family history. It is because of this that I don’t think the test is especially worth it. Yes, you could find out you are at an increased risk and yes, you could start preparing for care, but I think that this test is fairly insignificant in terms of your overall Alzheimer’s risk. Since there is such a large amount of factors that go into developing this disease both genetic and environmental, I believe individuals with family history should do what they can to make the most of life, not worrying about their timeline. I’m not saying they should do nothing though. Individuals should take charge and control what they can. The Mayo Clinic states that there are ways to reduce your risk of Alzheimer’s. These include:

  • Avoid smoking.
  • Control vascular risk factors, including high blood pressure, high cholesterol and diabetes.
  • Eat a balanced diet — such as the Mediterranean diet — that’s rich in vegetables, fruits and lean protein, particularly protein sources containing omega-3 fatty acids.
  • Be physically and socially active, including engaging in aerobic exercise.
  • Take care of your mental health.
  • Use thinking (cognitive) skills, such as memory skills.

Alzheimer’s is an awful disease that affects lots of families. That’s why I believe until testing improves to pinpoint risk of the disease, people should to their best to reduce their risk by living a lifestyle that is aware but not fearful of their risk of Alzheimer’s.

Sources

“Alzheimer’s Prevention: Does It Exist?” Mayo Clinic, Mayo Foundation for Medical Education and Research, 20 Apr. 2019, www.mayoclinic.org/diseases-conditions/alzheimers-disease/expert-answers/alzheimers-prevention/faq-20058140.

“The Role of Genes in Your Alzheimer’s Risk.” Mayo Clinic, Mayo Foundation for Medical Education and Research, 19 Apr. 2019, www.mayoclinic.org/diseases-conditions/alzheimers-disease/in-depth/alzheimers-genes/art-20046552.

“Alzheimer’s Society’s View on Genetic Testing.” Alzheimer’s Society, www.alzheimers.org.uk/about-us/policy-and-influencing/what-we-think/genetic-testing.

“APOE Apolipoprotein E [Homo Sapiens (Human)] – Gene – NCBI.” National Center for Biotechnology Information, U.S. National Library of Medicine, www.ncbi.nlm.nih.gov/gene/348.

Should You Get Genetic Testing for non-Hodgkin Lymphoma?

By Marianne Lamarche

This year, an estimated 74,200 people in the United States will be diagnosed with non-Hodgkin Lymphoma, the seventh most common cancer in both men and women. With an overall five-year survival rate of only 71%, this cancer poses a devastating threat to the health of thousands every year. As genetic testing technology flourishes, however, scientific advances are providing hope for lymphoma and other similar diseases. Here is everything you need to know about the groundbreaking technology and what it means for you and your family.

A 2006 study by the National Cancer Institute found that SNPs in two genes, tumor necrosis factor-alpha and lymphotoxin-alpha, were associated with a 1.31x increase in non-Hodgkin lymphoma. These genes affect inflammatory and innate immune responses, which can result in patients with lymphoma struggling to fight off infections. This could make the patients disastrously sick, so doctors searched far and wide for a way to detect these genes as early as possible.

Image result for non hodgkin lymphoma graphic

Recently, the Mayo Clinic became the first in the US to offer genetic testing for Lymphoma. While the clinic did not describe exactly what type of test this entails or how much it would cost, the director of the Center for Individualized Medicine at the Mayo Clinic has stated its appeal. “Diagnostic tests such as the Lymph2Cx test will address an unmet need of cancer patients in the U.S. and worldwide,” Dr. Stewart said. “New tests like this help us identify accurate diagnoses and treatments quickly, saving time and money, and, ultimately, transforming patient care.” By studying gene expression and mutations, doctors may be able to more clearly define which patients will respond best to certain therapies, potentially allowing them to treat patients without intrusive chemotherapy.

But we have to consider that these new discoveries still have some limitations. The research on the proinflammatory cytokosine genes listed above was associated with a marked increase in non-Hodgkin lymphoma, but other variations that impact the trait might remain unknown. In general, more research needs to be conducted, as the researchers themselves stated that their “results require replication”. Due to the relatively new nature of these studies, genetic testing might not be the best idea for everyone, since there is so much left to learn about these genes and their impacts on non-Hodgkin lymphoma, and the results of the testing could be misleading.

Results of genetic testing for non-Hodgkin lymphoma could also have some adverse ethical consequences. Dr. Staudt, the lead author of a 2018 study from the New England Journal of Medicine, believes that lymphoma patients should discuss the pros and cons of genetic testing with their oncologist. As cancer research is still in developmental stages, there may not be drugs available for every mutation found in lymphoma patients. In this scenario, their best option for treatment could still be chemotherapy. However, for patients not yet diagnosed with lymphoma but who fear they might be susceptible to it in the future, genetic testing could help them discover if they possess the genes that are associated with an increased risk for non-Hodgkin lymphoma. This also has ethical considerations, though, because if they find out they possess the gene, they might develop chronic stress and experience a decline in their quality of life, whereas even if they discover they don’t possess it, there are so many other branches of lymphoma that they might still become sick despite their efforts to be proactive. 

Family history does not have a strong impact on the likelihood of contracting lymphoma; it isn’t currently found to run in families, although your risk might be slightly increased if a first-degree relative has had lymphoma.Thus, you may want to get this genetic test if a parent or sibling has had lymphoma in the past. If you do test positive, however, there are a few lymphoma risk factors that you should avoid to decrease your chances of becoming ill. Medical conditions or treatments that weaken the immune system, such as HIV or post-organ transplant medicine, autoimmune conditions, the Epstein-Barr virus, a Helicobacter pylori infection, having received chemotherapy or radiation for another cancer, or having celiac disease are all associated with an increased risk of developing the condition. But because most of these factors aren’t under your control, the most important reaction to a positive test would be to see an oncologist frequently to detect lymphomatic cells ASAP.

Genetic testing for diseases is a new, potentially life-changing field, but it must continue to develop in order to fully help as many people as possible without infringing on medical and personal privacy and rights. In the case of lymphoma, it is encouraging that new tests may be able to identify the best and most effective treatments for patients, although the lack of control over developing the disease reduces the impact of proactive genetic knowledge. There is still much work to be done – but thankfully, researchers are on the right track towards a healthier, brighter future for you and everyone you care about. Make sure to keep visiting your doctors regularly, maintain a healthy lifestyle, and stay up-to-date on new medical options available. These steps will help to ensure the best outcome possible for your health and wellbeing!

References

Causes: Non-Hodgkin Lymphoma. (2018, October 19). Retrieved from https://www.nhs.uk/conditions/non-hodgkin-lymphoma/causes/.

Katus, S., Roan, S., Raeburn, P., Steele, M. F., & Takeda, A. (2018, April 20). Genetic Testing Reveals Many Different Types of Lymphoma. Retrieved from https://www.everydayhealth.com/lymphoma/treatment/genetic-testing-reveals-many-different-types-lymphoma/.

Lymphoma – Non-Hodgkin – Statistics. (2019, February 28). Retrieved from https://www.cancer.net/cancer-types/lymphoma-non-hodgkin/statistics.

Lymphoma. (2009, December 1). Retrieved from https://www.snpedia.com/index.php/Lymphoma.

Mayo Clinic first in U.S. to offer genetic test for lymphoma. (2019, May 30). Retrieved from https://www.mayo.edu/research/forefront/mayo-clinic-first-us-offer-genetic-test-lymphoma.

Wang, S. S., Cerhan, J. R., Hartge, P., Davis, S., Cozen, W., Severson, R. K., … Rothman, N. (2006). Common Genetic Variants in Proinflammatory and Other Immunoregulatory Genes and Risk for Non-Hodgkin Lymphoma. Cancer Research, 66(19), 9771–9780. doi: 10.1158/0008-5472.can-06-0324

Genetic Testing for Bipolar Disorder

By Hailey Maxwell

What Is Bipolar Disorder, Actually?

Bipolar disorder, also known as manic-depression or major affective disorder, is found in approximately 4 percent of the adult human population (Comer & Comer, 2018). There is a strong biological basis for this disease, including a genetic predetermination towards developing it. The risk increases to up to 10% if a close relative has the disorder. Among identical twins, the concurrence is between 40 and 70%. Additionally, children of men who were above the age of 40 at the time of conception are 6 times more likely to develop the disorder, which is thought to be because as men age, they have more mutations in their sperm (Comer & Comer, 2018). It is not known how many genes impact one’s likelihood of developing bipolar disorder. Many genes have been found to, in combination, increase one’s risk. Genes on 12 chromosomes have been linked to bipolar disorder (Comer & Comer, 2018). 

The Genetics of Bipolar Disorder

A specific gene involved in bipolar disorder is GRM7, which codes for proteins at the receptor sites for the neurotransmitter L-glutamate, an important excitatory neurotransmitter in the central nervous system (Jun et al., 2014). The mutation in GRM7 that is tested for in genetic testing is a deletion that affects the structure of certain neurons, preventing them from receiving the neurotransmitter glutamate (Escamilla & Zavala, 2008). This prevents these neurons from firing properly.

The best-known genetic test for bipolar disorder is the Autism spectrum/hyperactivity/bipolar disorder, GRM7 related test. The test costs $399. It tests for the deletion or duplication of the gene (Doheny, 2008). However, there are so many genes involved in bipolar disorder that this one test will not be very informative as to one’s risk of developing the disorder. When considered along with race and family history, the results of the test are more informative. The group for which the test is most informative is white people of Northern European ancestry who have a family history of bipolar disorder. If the test comes back positive, this group is 3 times as likely to develop the disorder (Doheny, 2008). However, when considering that the rate among the general population is only 4%, an increase by a factor of 3 only raises the risk to 12%. 

Should You Get Tested?

My recommendation would not be to get this, or any other, test for bipolar disorder. There are too many genes involved in the disorder for any one to be able to make a significant difference in the risk of developing the disorder and there is no test that can test for enough of the genes to be a good indication of whether someone will develop it. Even if this were the only gene that contributed to this disorder, a positive result on the test only marginally increases one’s risk. Even if the test were free, it would still not be recommended, but for the price of $400, I do not suggest taking this test. Instead, if you are concerned about your mental health, treat yourself well. Avoid stress, caffeine, and alcohol or other drug use. Exercise, sleep and eat well, and keep a consistent schedule (Healthwise Staff, 2018).

I Got Tested. Now What?

If you decide to go through with the test and you test negative, you do not know anything more about your risk of developing bipolar disorder. You may or may not have a mutation in a different gene that increases your risk. If you test positive, do not be overly concerned. Your risk of developing the disorder is still very low and the odds are that you will not suffer from bipolar disorder at any point in your lifetime. If you are still concerned that you will develop bipolar disorder, it is best to reduce your stress. Other than biological causes, stress is the largest agitator of bipolar disorder (Comer & Comer, 2018). It is also recommended to reduce alcohol and other drug use, as many of these substances heavily impact one’s moods and can potentially influence the development or treatment of a mood disorder.

It is suggested that you share the results of this test with your therapist, especially if you are in treatment for major depressive disorder. Bipolar disorder is often misdiagnosed as major depressive disorder when the patient has not yet had a serious manic episode. Sharing with your therapist that you are at heightened risk for bipolar disorder is recommended so that he or she may keep a closer eye out for manic behaviors and be quicker to treat them if they appear. 


Sources:

Comer, R. J., & Comer, J. S. (2018). Abnormal psychology.

Doheny, K. (2008, June 4). At-Home Bipolar Disorder Test: Accuracy, Diagnosis, and More. Retrieved November 13, 2019, from https://www.webmd.com/bipolar-disorder/features/at-home- bipolar-test-help-or-hindrance#1

Escamilla, M. A., & Zavala, J. M. (2008). Genetics of bipolar disorder. Dialogues in clinical neuroscience, 10(2), 141–152.

Healthwise Staff (2018, September 11). Bipolar Disorder: Preventing Manic Episodes. Retrieved from https://www.healthlinkbc.ca/health-topics/ty6584.

Jun, C., Choi, Y., Lim, S. M., Bae, S., Hong, Y. S., Kim, J. E., & Lyoo, I. K. (2014). Disturbance of the glutamatergic system in mood disorders. Experimental neurobiology, 23(1), 28–35. doi:10.5607/en.2014.23.1.28

Athletic Ability

Nico Fontova

            Hard work and talent are two central components to athletic performance. It is crucial for a world-class athlete to be laser-focused committed to improvement, but hard work alone will not determine success. Whether we like it or not, talent—or genetics—influences athletics, but how exactly does it do it?

            There are over 150 genes found to be associated with athletic performance, but most do not have a large enough or statistically significant effect. Two genes in particular play a larger role in athletic performance and building certain types of athletes: ACTN3 (on chromosome 11) and ACE (chromosome 17). The ACTN3 gene creates alpha-actin-3, a protein which is part of the composition of fast twitch muscle fiber.1 Fast twitch muscle fiber is one of two fibers in muscle. It can contract very quickly but also tires quickly and is key to our ability to sprint. Slow twitch fiber is the other; it contracts slowly but has much more endurance.1 The mutation impacting ACTN3 is a SNP (a change of one base to another in the DNA sequence) which changes an amino acid into a stop codon, halting or entirely stopping alpha-actin production. This mutation is shorthanded with an X (for the premature stop) and the normal version is written as an R (for arginine, the original amino acid). Homozygous individuals are RR or XX, while heterozygotes are RX. XX individuals completely lack production of the protein, and therefore much less fast twitch muscle fiber. The XX allele is common in endurance athletes, while the RR and RX alleles are more common in short distance sprinters. The ACE gene codes for a protein which primarily regulates blood pressure, but also influences muscle function in an unclear way. The mutation in this case is an insertion called ACE-I, which is prominent in endurance athletes. ACE-D is the allele without the insertion, and DD and ID athletes are more likely to be sprinters.1,3 These are the genes the influence athletic ability, and it is clear that being RR is more beneficial to sprinters, but is being an XX homozygote give you an advantage in endurance events? And if so, can people use genetic testing to determine their endurance ability?

            Genetic testing for ACTN3 and ACE mutations could possibly be an indicator of your athleticism and could be used to identify future sprinting or endurance talent in young people. 23andMe tests for both genes, so a SNP Chip would be the recommended test, but using these tests as absolute evidence for endurance ability is risky. 

  • A University of Bristol study found the ACTN3 R allele to be associated with sprint performance in Europeans but did not find the X allele to improve endurance ability.4
  • Another study found that only 20% of elite North American and European distance runners studied were XX homozygous, which is slightly higher than the control group at 17.5%.5
  • There clearly is some benefit with the genes, however, as a Swedish study found that only three out of 46 Spanish distance runners tested had a perfect genotypic profile for endurance (including ACE-I and ACTN3-X), but they were among the best in the world.6             

XX homozygotes seem to have a slight advantage in endurance events (in that they are the best of the best in the Swedish study), but it is not a large or possibly notable advantage. Testing for these genes is clearly helpful in determining muscle performance, but they cannot predict someone’s proficiency in a sport by themselves, which could be unethical if taken too far.

            This trait does cross many ethical lines, except for possibly using the test to select children and train children from a young age for certain disciplines. Both ACE and ACTN3 are not the sole predictors of athletic performance, however, so making a child a distance runner because he is II or XX would be wrong; it is important for someone to do what they like and not necessarily what they would be genetically proficient in. Many other factors play into athletic ability including a healthy training environment and eagerness to improve, which may not be present if someone is being forced to train because of genetics. An X or I positive test would affect a sprinter more because they would have less fast twitch muscle fiber in their bodies than others and be at an actual and proven disadvantage. One could use testing to see if they would be good short distance athletes, but most people have the R alleles that account for sprinting ability (around 20%-100% of each studied ethnic group in SNPedia), suggesting that the test is really only useful in current sprinters to see if they are at a genetic disadvantage by being RX.2 This test can be used to measure athletic ability, but a VO2 Max test (a test of the max volume of oxygen the body can use under stress) would be much more useful in determining current athletic ability, while genetic testing could determine potential ability.

            If you test positive for the I or X alleles, maybe you should try your hand in endurance running, or if you already run, feel reassured in your choice, but don’t sweat it too much (unless you plan on being a world class 100 meter runner) because plenty of elite distance runners are RR or RX, and athletic ability is about more than just two genes.5,6 In my opinion, parents should not test their children specifically for this gene or use the results to predict anything because there are many other factors contributing to athletic ability, and the evidence is not solid enough to prove that someone has talent for endurance event because of these genes. ACTN3 and ACE are indicators of how fast you can move, but they are not the whole story and certainly should not be treated as such.

References

  1. Is Athletic Performance Determined by Genetics?. U.S. National Library of Medicine Web Site. https://ghr.nlm.nih.gov/primer/traits/athleticperformance. Updated November 12, 2019. Accessed November 14, 2019.
  1. Rs1815739. SNPedia Web Site. https://www.snpedia.com/index.php/Rs1815739. Updated December 6, 2018. Accessed November 14, 2019.
  1. Rs1799752. SNPedia Web Site. https://www.snpedia.com/index.php/Rs1799752. Updated January 6, 2018. Accessed November 14, 2019.
  1. Alfred T, Ben-Shlomo Y, Cooper R, et al. ACTN3 genotype, athletic status, and life course physical capability: meta-analysis of the published literature and findings from nine studies. NCBI, 2011; Abstract. https://www.ncbi.nlm.nih.gov/pubmed/21542061?dopt=Abstract. Accessed November 14, 2019.
  1. Döring FE, Onur S, Geisen U, et al. ACTN3 R577X and other polymorphisms are not associated with elite endurance athlete status in the Genathlete study. NCBI, 2010; Abstract. https://www.ncbi.nlm.nih.gov/pubmed/20845221?dopt=Abstract. Accessed November 14, 2019.
  1. Ruiz JR, Gómez-Gallego F, Santiago C, et al. Is there an optimum endurance polygenic profile? NCBI, 2009; Abstract. https://www.ncbi.nlm.nih.gov/pubmed/19237423?dopt=Abstract. Accessed November 14, 2019.

Marfan Syndrome

Marfan syndrome is a genetic disease that affects the body’s connective tissue. People with the disease tend to be extremely tall and slender. This disease affects about 1 in every 5,000 people [1]. Marfan syndrome is typically caused by a mutation in the FBN1 gene which affects the way in which the protein fibrillin-1 is made. The production of the protein is enhanced and the surplus in fibrillin-1 is what harms the connective tissue, ultimately causing problems all over the body. Because Marfan syndrome causes complications throughout the body— such as in the heart, bones and joints, lungs, and nervous system— it makes sense that the FBN1 gene variation is what causes the disease [2].

[7]

Why and How to Test

            Testing for Marfan syndrome is very important if you think there might be a chance that you have it. This is due to the fact that even if the symptoms are not always life threatening, they are detrimental to your way of life. If you find out that they are a result of Marfan syndrome, you can be more cognizant of the way you go about life so that you can live up to the normal life expectancy that the disease usually entails. For example, having Marfan syndrome would make it dangerous to play contact sports, both because of the brittleness of your bones and the higher risk you have for heart enlargement and heart failure as a result of that. The most effective and efficient form of genetic testing for Marfan syndrome is single gene DNA sequencing, as the disease is typically a product of a variation in the FBN1 gene. This is the case for up to 90% of the time. If the result of the test is negative, it might be helpful to do the same DNA sequencing for TGFBR1 and TGFBR2. If the aforementioned complications are present and testing is positive for a variation in any of these genes, then it is highly likely that someone has Marfan syndrome [3]. But if there are no symptoms present, then there is a chance that the person has another disease. There is a 50% chance that a parent with the disease will pass it on to their offspring, so it is important to have as many family members as possible test [1].

Scientific Risks of Testing

            Having a genetic variation in the FBN1 gene usually causes some sort of condition that is paired with Marfan syndrome, such as the common variant rs12916536 leading to adolescent scoliosis [4]. However, testing for this gene is not always straightforward. For example, other variations of the gene can be linked to ectopia lentis syndrome, Weill-Marchesani syndrome, Shprintzen-Goldberg syndrome and neonatal progeroid syndrome [5]. Because of that, it is important to test multiple family members if there is a discovered variant in the FBN1 gene. Some of these gene changes could actually be polymorphisms, which are not likely to cause Marfan syndrome [5], so the risk of someone having a variation in the gene to also have Marfan syndrome is not a certainty, but not having that variation does mean that one does not have the disease.

Ethical Considerations

            Most of the ethical questions regarding genetic testing used for Marfan syndrome is meant to question if genetic testing is even the best method to determine if one has Marfan syndrome. First of all, the cost might not be worth it because of the obvious physical characteristics of one with Marfan syndrome. As a child works through adolescence, they eventually would be able to notice their unusually long limbs and fingers and would likely have other abnormalities common for the disease. While that might not be indicative of anything other than just being tall and skinny, there are enough complications with the body caused by Marfan syndrome that would pile up and ultimately cause worry. But even still, they would have to test in some manner to be sure.

Another reason why a DNA sequencing might not be the best option is that there are other tests that one can have, such as an EKG, cardio ultrasound, cardiac MRI, or CT scan. These are the best ways to see abnormalities with the heart, blood vessels, spine, and skeletal system. These tests however are typically more expensive than the genetic test, which is usually around $2,000 [5]. However, being able to see the plethora of complications through these medical examinations seems to be more effective than the genetic test, as variations found in the test might not prove someone has Marfan syndrome. People who take the genetic test would end up having to pay north of $2,000 more for a different test to get complete accuracy.

There also come the behavioral and psychological effects that come with knowing you have Marfan syndrome. Initially, there are feelings of denial, anger, and depression, which come with many diseases. But accepting that you or someone close has the disease means living a different way of life. For example, it is important to stay out of active sports and all activities that put someone at risk for severe injury. Also, people affected must come to terms with the idea that they look different than others and that they would in some cases need special protection. Finding the balance of protecting yourself or your child while still being as involved in activity as possible will alleviate some of the frustration with the way of life [6].

Questions to Ask Before Getting the Test

  • If someone in the family has already tested positive, what are the chances that a child also tests positive? Children have a 50% chance of having the disease if one parent does. For more extended family, the chances vary as different parents come into play.
  • What should be the plan if someone tests positive? The first thing to consider if someone tests positive is whether or not they want to participate in further screenings. If the cost of that isn’t worth it, then someone who tests positive should at least act as though they do have the disease, especially if they possess some of the bodily complications.
  • What types of environmental factors should they consider changing if they test positive? Someone who tests positive should most certainly continue to stay active, but to a much lesser degree. Active sports and heavy lifting are highly dangerous to someone with Marfan syndrome, but it is absurd to completely remove physical activity from someone’s life.

Ultimately, a certain level of concern that you might have Marfan syndrome would make it worth it to get tested in some manner, whether it be genetic testing, medical screening, or both. Knowledge that you might have to change your lifestyle is scary, but it beats the likely alternative of dying from the complications of Marfan syndrome when you weren’t aware you had it.

References

  1. “What Is Marfan Syndrome?” The Marfan Foundation, 3 Oct. 2018, www.marfan.org/about/marfan.
  2. “Marfan Syndrome.” National Center for Biotechnology Information, U.S. National Library of Medicine, www.ncbi.nlm.nih.gov/gtr/conditions/C0024796/.
  3. “Marfan Syndrome – FBN1 Gene.” National Center for Biotechnology Information, U.S. National Library of Medicine, www.ncbi.nlm.nih.gov/gtr/tests/502890/.
  4. Sheng, Fei, et al. “New Evidence Supporting the Role of FBN1 in the Development of Adolescent Idiopathic Scoliosis.” National Center for Biotechnology Information, U.S. National Library of Medicine, 15 Feb. 2019, www.ncbi.nlm.nih.gov/pubmed/30044367.
  5. “Marfan Syndrome Diagnosis and Tests.” Cleveland Clinic, 3 May 2019, my.clevelandclinic.org/health/diseases/17209-marfan-syndrome/diagnosis-and-tests.
  6. Bennett, Robin L., and Meinhard Robinow. “Marfan Syndrome.” University of Washington Orthopedics and Sports Medicine, orthop.washington.edu/patient-care/articles/arthritis/marfan-syndrome.html.
  7. Zink, William P., “Marfan Syndrome.” August 2015, http://zinkmd.com/portfolio/amet-sollicitudin.

Genetic Testing- Alcoholism, by David Wang

What is alcoholism

Alcohol dependence, also known as alcoholism, is a form of alcohol addiction where the individual has a physical dependence on the consumption of alcohol. This physical dependence causes individuals to consume more alcohol than individuals who do not have a dependence on alcohol, which further increases the health risks of alcohol. Some of these risks include high blood pressure, stroke, and liver cancer. Furthermore, according to the National Institute of Health (NIH), individuals with alcoholism are more vulnerable to diseases such as tuberculosis and pneumonia. This is because alcohol can weaken the immune system. Every year, over 3.3 million individuals die worldwide due to alcoholism. This is the third highest cause of preventable deaths, behind smoking and overeating. In addition, according to data from 2009, approximately 3.5% of cancer deaths in the United States was caused by alcohol.

According to SNPedia, there are six known SNPs that affect the likelihood that an individual will suffer from alcoholism. One example of these SNPs is rs1799971, where the rs1799971 (G) variant increases one’s cravings for alcohol compared to the normal allele, rs1799971 (A) for both carriers and individuals with two G alleles. However, for individuals with the G variant, they respond to naltrexone treatment better than those with the A variant.

Testing for alcoholism

Some individuals may experience more severe symptoms as a result of alcoholism, such as seizures and increased risk for ADHD. For those who are concerned about such symptoms, they should take a genetic test to see if they have an increased likelihood of suffering from such symptoms. Because there are two SNPs, rs27048 and rs27072, that are associated with such severe symptoms, an SNP test, which does not need to be a whole sequencing test, will produce the best results at the lowest costs, such as a $199 23andme test. However, if anyone is interested in whether he or she has an increased risk of alcoholism in general, a $599 Veritas test works best. However, a test specifically for rs1076560 (A), which is the most common allele that increases the risk of alcoholism, also works well. Carriers of this allele are 30% more at risk of becoming an alcoholic compared to individuals who have two rs1076560 (C) alleles. The tests will satisfy the needs of those who are interested in such information, as there is enough evidence to conclude that an increased risk of alcoholism has correlations with genetics. Despite the evidence, however, having an allele that increases the risk for alcoholism does not guarantee that one will become an alcoholic, nor does it guarantee that one will develop the more severe symptoms, such as ADHD, as the risks of having certain alleles are probability-based, rather than a guarantee. For instance, while data shows that a carrier of the rs1076560 (A) allele is 30% more likely to become an alcoholic, this does not mean that he or she will be an alcoholic automatically because he or she drank one sip of beer. Furthermore, there are some contradictory studies against the idea that rs1799971 has anything to do with alcoholism.

Ethical Concerns

According to the National Institutes of Health, the majority of participants in a study regarding the effects of genetics on alcoholism were more concerned about discrimination from their physician (approximately 40%), rather than their family and friends (approx. 29%). Therefore, if participants are considering such a test, then they should evaluate whether they would feel comfortable around their physician after taking such a test.

Testing Positive

If someone tests positive in regards to any of the alleles that increase the risk of alcoholism, then his or her has a likelihood of inheriting this risk, as these alleles are hereditary. In order to better manage this risk, he or she can contact the Addiction Center for advice. Rehabilitation treatment from the Addiction Center is not necessary, unless he or she already has an alcohol addiction. However, if anyone tests positive, then he or she should not be forbidden to drink as long as he or she follows the rules that pertain to drinking, such as not drinking until 21 and avoiding the behavior of drunk driving. Heavier self-restraint, however, is advised, and abstinence is recommended. If an individual has a rs1799971 (G) allele and is suffering from alcoholism, then he or she should consult a doctor because individuals with this allele, despite having an increased risk of alcoholism, respond better to naltrexone treatment than normal individuals do.

Sources

Scott, D. M. et al. (2014, August). Genetic testing for the susceptibility to alcohol dependence:  interest and concerns in an African American population. Retrieved from https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4120651/

23andMe. (2019, October 4). The Genetics of Alcoholism. Retrieved from https://blog.23andme.com/23andme-research/the-genetics-of-alcoholism/

Alcoholism. (n.d.). Retrieved from https://www.snpedia.com/index.php/Alcoholism

rs1799971. (n.d.). Retrieved from https://www.snpedia.com/index.php/Rs1799971

rs1076560. (n.d.). Retrieved from https://www.snpedia.com/index.php/Rs1076560

rs27072. (n.d.). Retrieved from https://www.snpedia.com/index.php/Rs27072

rs27048. (n.d.). Retrieved from https://www.snpedia.com/index.php/Rs27048

Alcohol’s Effects on the Body. (2019, June 6). Retrieved from https://www.niaaa.nih.gov/alcohols-effects-body.